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Our close colleagues and friends at the institut pasteur, paris, host databases for a range of species not available on pubmlst The plasmid mlst website contains databases containing definitions for mlst of the a/c, i1, hi1, hi2, f and n incompatibility groups The same software is used for both sites.
Public databases for molecular typing and microbial genome diversity We welcome submissions to the databases hosted on pubmlst Access to the databases can be obtained by registering for a pubmlst account and making the request via the registration system
Taxonomic coverage of the databases
Bigsdb software, the pubmlst.org website and their applications Where these are hosted on pubmlst, they represent a small subset of the data hosted, all of which is available via the application programming interface (api) A few of the schemes are hosted at pasteur and the links point to their api. Where schemes are primarily hosted on other sites these sites remain authoritative for all definitions used
They are being hosted here so that sequence types can be identified in multispecies whole genome databases on pubmlst.org Schemes from other sites available here include:
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